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Analyzing ChIP-chip Data Using Bioconductor

  • Joern Toedling mail,

    toedling@ebi.ac.uk

    Affiliation: EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

    X
  • Wolfgang Huber

    Affiliation: EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

    X

Reader Comments (6)

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To reproduce, please use the R code file in the companion R package, do not copy-paste from the article

Posted by WolfgangHuber on 23 Jan 2009 at 19:44 GMT

Please do not try to copy-paste the code from the article into an R
session - rather, please use the code provided with the package
"ccTutorial", which is for example available from
http://www.bioconductor.o...

The code is in the "vignettes" subdirectory of the package, in the file
ccTutorial.Rnw. You can use the R function "Stangle" to extract the R
code only from this combined document.

The code chunks shown in the article use funny quotation marks, have
spaces in the wrong places, and the "+" character for line continuation
will confuse the R parser.

Let us know how it goes.