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Research Article

De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

  • Harish Nagarajan,

    Affiliations: Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, California, United States of America, Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America

    X
  • Jessica E. Butler,

    Affiliation: Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America

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  • Anna Klimes,

    Affiliation: Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America

    Current address: Department of Physical and Biological Sciences, Western New England College, Springfield, Massachusetts, United States of America

    X
  • Yu Qiu,

    Affiliation: Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America

    X
  • Karsten Zengler,

    Affiliation: Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America

    X
  • Joy Ward,

    Affiliation: Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America

    X
  • Nelson D. Young,

    Affiliation: Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America

    X
  • Barbara A. Methé,

    Affiliation: Department of Microbial and Environmental Genomics, J. Craig Venter Institute, Rockville, Maryland, United States of America

    X
  • Bernhard Ø. Palsson,

    Affiliation: Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America

    X
  • Derek R. Lovley,

    Affiliation: Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America

    X
  • Christian L. Barrett mail

    cbarrett@ucsd.edu

    Affiliation: Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America

    X
  • Published: June 08, 2010
  • DOI: 10.1371/journal.pone.0010922
  • Published in PLOS ONE

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Posted by shailesh on 19 Jan 2012 at 04:16 GMT

paired
http://plosone.org/article/info:doi/10.1371/journal.pone.0010922#article1.body1.sec4.sec2.sec1.p1

How we can assemble Illumina generated contigs with 454 reads with Newbler. Could you please give me the commands.

No competing interests declared.