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Analyzing ChIP-chip Data Using Bioconductor

  • Joern Toedling mail,

    toedling@ebi.ac.uk

    Affiliation: EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

    X
  • Wolfgang Huber

    Affiliation: EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

    X

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Changes to R code.

Posted by Lavinia on 22 Jan 2009 at 02:31 GMT

versions
http://ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000227#article1.body1.sec9.sec5.p1

The column names have changed, e.g. this is now correct:
mm9genes <- mm9genes[order(mm9genes$chromosome_name, mm9genes$start_position),c("ensembl_gene_id","chromosome_name","strand","start_position","end_position","mgi_symbol","description")]