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Research Article

RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins

  • Hilal Kazan,

    Affiliation: Department of Computer Science, University of Toronto, Toronto, Ontario, Canada

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  • Debashish Ray,

    Affiliation: Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada

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  • Esther T. Chan,

    Affiliation: Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada

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  • Timothy R. Hughes,

    Affiliations: Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada, Donnelley Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada

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  • Quaid Morris mail

    quaid.morris@utoronto.ca

    Affiliations: Department of Computer Science, University of Toronto, Toronto, Ontario, Canada, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada, Donnelley Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada

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About the Authors

Hilal Kazan, Quaid Morris
Department of Computer Science, University of Toronto, Toronto, Ontario, Canada
Debashish Ray, Timothy R. Hughes, Quaid Morris
Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada
Esther T. Chan, Timothy R. Hughes, Quaid Morris
Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada
Timothy R. Hughes, Quaid Morris
Donnelley Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada

Corresponding Author

Email: quaid.morris@utoronto.ca

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: HK TRH QM. Performed the experiments: HK ETC QM. Analyzed the data: HK ETC QM. Contributed reagents/materials/analysis tools: HK DR QM. Wrote the paper: HK QM.