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Research Article

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

  • Eva Chovancova equal contributor,

    equal contributor Contributed equally to this work with: Eva Chovancova, Antonin Pavelka, Petr Benes

    Affiliation: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

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  • Antonin Pavelka equal contributor,

    equal contributor Contributed equally to this work with: Eva Chovancova, Antonin Pavelka, Petr Benes

    Affiliations: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic, Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Petr Benes equal contributor,

    equal contributor Contributed equally to this work with: Eva Chovancova, Antonin Pavelka, Petr Benes

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Ondrej Strnad,

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Jan Brezovsky,

    Affiliation: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

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  • Barbora Kozlikova,

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Artur Gora,

    Affiliation: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

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  • Vilem Sustr,

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Martin Klvana,

    Affiliation: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

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  • Petr Medek,

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Lada Biedermannova,

    Affiliation: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

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  • Jiri Sochor mail,

    sochor@fi.muni.cz (JS); jiri@chemi.muni.cz (JD)

    Affiliation: Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

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  • Jiri Damborsky mail

    sochor@fi.muni.cz (JS); jiri@chemi.muni.cz (JD)

    Affiliations: Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic, International Centre for Clinical Research, St. Anne's University Hospital Brno, Brno, Czech Republic

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About the Authors

Eva Chovancova, Antonin Pavelka, Jan Brezovsky, Artur Gora, Martin Klvana, Lada Biedermannova, Jiri Damborsky
Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic
Antonin Pavelka, Petr Benes, Ondrej Strnad, Barbora Kozlikova, Vilem Sustr, Petr Medek, Jiri Sochor
Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic
Jiri Damborsky
International Centre for Clinical Research, St. Anne's University Hospital Brno, Brno, Czech Republic

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: EC AP PB OS JB BK AG VS MK PM LB JS JD. Performed the experiments: EC AP PB JB AG MK LB. Analyzed the data: EC AP JB JD. Wrote the paper: EC AP JB LB JD. Contributed the software code: AP PB OS BK VS PM JS. Edited the manuscript: PB OS BK AG VS MK PM JS. Prepared manual and examples: EC AP JB VS.