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Research Article

Using Biological Pathway Data with Paxtools

  • Emek Demir mail,

    paxtools@cbio.mskcc.org

    Affiliation: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America

    X
  • Özgün Babur,

    Affiliation: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America

    X
  • Igor Rodchenkov,

    Affiliation: The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada

    X
  • Bülent Arman Aksoy,

    Affiliations: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America, Tri-Institutional Training Program, Computational Biology and Medicine New York, New York, United States of America

    X
  • Ken I. Fukuda,

    Affiliation: Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan

    X
  • Benjamin Gross,

    Affiliation: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America

    X
  • Onur Selçuk Sümer,

    Affiliation: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America

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  • Gary D. Bader,

    Affiliation: The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada

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  • Chris Sander

    Affiliation: Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America

    X

About the Authors

Emek Demir, Özgün Babur, Bülent Arman Aksoy, Benjamin Gross, Onur Selçuk Sümer, Chris Sander
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, United States of America
Igor Rodchenkov, Gary D. Bader
The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada
Bülent Arman Aksoy
Tri-Institutional Training Program, Computational Biology and Medicine New York, New York, United States of America
Ken I. Fukuda
Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan

Corresponding Author

Email: paxtools@cbio.mskcc.org

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Wrote the paper: ED OB IR BAA GDB CS. Designed software: ED OB IR. Developed components and features: ED OB IR BAA KIF BG GDB. Tested features: ED OB IR BAA KIF BG OSS GDB. Wrote User's Guide and examples: ED OB IR OB OSS.