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Research Article

A Method for Similarity Search of Genomic Positional Expression Using CAGE

  • Shigeto Seno,

    Affiliation: Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan

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  • Yoichi Takenaka,

    Affiliation: Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan

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  • Chikatoshi Kai,

    Affiliation: Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan

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  • Jun Kawai,

    Affiliations: Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan, Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, Wako, Japan

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  • Piero Carninci,

    Affiliations: Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan, Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, Wako, Japan

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  • Yoshihide Hayashizaki,

    Affiliations: Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan, Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, Wako, Japan

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  • Hideo Matsuda mail

    To whom correspondence should be addressed. E-mail: matsuda@ist.osaka-u.ac.jp

    Affiliation: Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan

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  • Published: April 28, 2006
  • DOI: 10.1371/journal.pgen.0020044
  • Published in PLOS Genetics

About the Authors

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan
Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan
Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, Wako, Japan

Corresponding Author

Email: matsuda@ist.osaka-u.ac.jp

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

SS, YT, and HM conceived and designed the experiments. SS performed the experiments and analyzed the data. SS, CK, JK, PC, and YH contributed reagents/materials/analysis tools. SS, YT, and HM wrote the paper.