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Research Article

Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

  • Sidhartha Chaudhury,

    Affiliation: Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Monica Berrondo,

    Affiliation: Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Brian D. Weitzner,

    Affiliation: Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Pravin Muthu,

    Affiliation: Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Hannah Bergman,

    Affiliation: Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Jeffrey J. Gray mail

    jgray@jhu.edu

    Affiliation: Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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  • Published: August 02, 2011
  • DOI: 10.1371/journal.pone.0022477
  • Published in PLOS ONE

About the Authors

Sidhartha Chaudhury
Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States of America
Monica Berrondo, Brian D. Weitzner, Pravin Muthu, Hannah Bergman, Jeffrey J. Gray
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

Corresponding Author

Email: jgray@jhu.edu

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: SC MB BDW JJG. Performed the experiments: HB BDW MB. Analyzed the data: PM SC. Wrote the paper: SC BDW JJG.