RosettaCon 2010
The Rosetta framework for macromolecular modeling, prediction and design is a widely used code (over 7,000 registered groups) with a large, dynamic developer community (over 200 members). The Rosetta community, which includes developers and users from industry and academia, meets once a year to discuss improvements to Rosetta, new applications of the Rosetta code to biological and chemical problems, and core code development. This special collection (PLoS One Special collection: RosettaCon 2010) presents recent developments from the Rosetta community, drawn from the groups participating in RosettaCon 2010.
The collection focuses on the publication of both the science and the reproducible computational workflow: each paper is accompanied by an annotated archive containing the code, scripts and data-sets needed to carry out the computational protocol described in the paper.
Articles are presented in order of publication date and new articles will be added to the Collection as they are published.
Editorial oversight, and coordination of the peer-review, was provided by Vladimir Uversky, PLoS ONE Academic Editor.
Image Credit: Chris Poultney, Richard Bonneau, New York University
Collection Citation: RosettaCon 2010 (2011) PLoS Collections: http://www.ploscollections.org/RosettaCon2010
Overview Top
The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing
PLoS ONE:Published 31 Aug 2011 | info:doi/10.1371/journal.pone.0022431
Research Articles Top
Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design
PLoS ONE:Published 14 Mar 2012 | info:doi/10.1371/journal.pone.0032637
Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction
PLoS ONE:Published 02 Sep 2011 | info:doi/10.1371/journal.pone.0023947
RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
PLoS ONE:Published 31 Aug 2011 | info:doi/10.1371/journal.pone.0024109
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
PLoS ONE:Published 24 Aug 2011 | info:doi/10.1371/journal.pone.0023294
Real-Time PyMOL Visualization for Rosetta and PyRosetta
PLoS ONE:Published 16 Aug 2011 | info:doi/10.1371/journal.pone.0021931
Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2
PLoS ONE:Published 02 Aug 2011 | info:doi/10.1371/journal.pone.0022477
Modeling Disordered Regions in Proteins Using Rosetta
PLoS ONE:Published 29 Jul 2011 | info:doi/10.1371/journal.pone.0022060
Predicting the Tolerated Sequences for Proteins and Protein Interfaces Using RosettaBackrub Flexible Backbone Design
PLoS ONE:Published 18 Jul 2011 | info:doi/10.1371/journal.pone.0020451
A Generic Program for Multistate Protein Design
PLoS ONE:Published 06 Jul 2011 | info:doi/10.1371/journal.pone.0020937
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
PLoS ONE:Published 24 Jun 2011 | info:doi/10.1371/journal.pone.0020161
Modeling Symmetric Macromolecular Structures in Rosetta3
PLoS ONE:Published 22 Jun 2011 | info:doi/10.1371/journal.pone.0020450
Anchored Design of Protein-Protein Interfaces
PLoS ONE:Published 17 Jun 2011 | info:doi/10.1371/journal.pone.0020872
Four Small Puzzles That Rosetta Doesn't Solve
PLoS ONE:Published 20 May 2011 | info:doi/10.1371/journal.pone.0020044
De Novo Enzyme Design Using Rosetta3
PLoS ONE:Published 16 May 2011 | info:doi/10.1371/journal.pone.0019230
Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
PLoS ONE:Published 29 Apr 2011 | info:doi/10.1371/journal.pone.0018934