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Research Article

A Biophysical Model for Analysis of Transcription Factor Interaction and Binding Site Arrangement from Genome-Wide Binding Data

  • Xin He,

    Affiliation: Department of Computer Science, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America

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  • Chieh-Chun Chen,

    Affiliation: Department of Bioengineering, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America

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  • Feng Hong,

    Affiliation: Department of Statistics, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America

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  • Fang Fang,

    Affiliation: Gene Regulation Laboratory, Genome Institute of Singapore, Singapore, Singapore

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  • Saurabh Sinha,

    Affiliation: Department of Computer Science, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America

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  • Huck-Hui Ng,

    Affiliation: Gene Regulation Laboratory, Genome Institute of Singapore, Singapore, Singapore

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  • Sheng Zhong mail

    szhong@illinois.edu

    Affiliations: Department of Computer Science, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America, Department of Bioengineering, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America, Department of Statistics, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America

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  • Published: December 01, 2009
  • DOI: 10.1371/journal.pone.0008155
  • Published in PLOS ONE

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