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Research Article

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology

  • Thomas E. Gorochowski mail,

    thomas.gorochowski@bristol.ac.uk

    Affiliation: Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Antoni Matyjaszkiewicz,

    Affiliation: Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Thomas Todd,

    Affiliation: Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Neeraj Oak,

    Affiliation: Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Kira Kowalska,

    Affiliation: Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Stephen Reid,

    Affiliation: Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Krasimira T. Tsaneva-Atanasova,

    Affiliation: Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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  • Nigel J. Savery equal contributor,

    equal contributor Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

    Affiliation: School of Biochemistry, Medical Sciences, University Walk, Bristol, United Kingdom

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  • Claire S. Grierson equal contributor,

    equal contributor Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

    Affiliation: School of Biological Sciences, University of Bristol, Bristol, United Kingdom

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  • Mario di Bernardo equal contributor

    equal contributor Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

    Affiliations: Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom, Department of Systems and Computer Engineering, University of Naples Federico II, Napoli, Italy

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  • Published: August 24, 2012
  • DOI: 10.1371/journal.pone.0042790
  • Published in PLOS ONE

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